PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Oropetium_20150105_19695A
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Cynodonteae; Tripogoninae; Oropetium
Family bHLH
Protein Properties Length: 233aa    MW: 26508.3 Da    PI: 8.2123
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Oropetium_20150105_19695AgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.72.7e-051361153
                               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
                        HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53
                               r++ + erE+  Rd++N+ f eL ++l ++     + + Ka iL  +++ +++
  Oropetium_20150105_19695A 13 RKVHKAEREKLKRDNLNDLFVELGDMLDED----RQNNGKACILADTTRILRD 61
                               678889*********************997....4556666677666666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.6E-10982IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-12982IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.551262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
PVAGKKIQKK APRKVHKAER EKLKRDNLND LFVELGDMLD EDRQNNGKAC ILADTTRILR  60
DLLSQVESLR MENSTLQNES HYVTMERDEL RDETSALGKE ILELQNELRM RLSXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXPL QQPRSSTAVI ELPYVAAPRE LKLFPRAGYE  180
PAKDKEATNH VTRPQARYPM QAASWPVNLF SGLPRMEDEQ CSSTTTGSGS SK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148562.14e-89amelogenin precursor like protein
RefseqXP_008676027.14e-89PREDICTED: amelogenin precursor like protein isoform X1
RefseqXP_008676033.14e-89PREDICTED: amelogenin precursor like protein isoform X1
RefseqXP_008676036.14e-89PREDICTED: amelogenin precursor like protein isoform X1
TrEMBLB6T4L84e-89B6T4L8_MAIZE; Amelogenin like protein
TrEMBLB8A2P84e-89B8A2P8_MAIZE; BHLH transcription factor
STRINGGRMZM2G350312_P011e-88(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.34e-33bHLH family protein